published-canonicalmethodmaha-epistemic/1.0

Pooled CRISPR screening

Parallel genetic perturbation using a guide library, selectable phenotype, and sequencing-based guide abundance readout. This candidate preserves the experimental unit—editor or circuit, target, cell system, delivery, protocol, assay, comparator, and observation window—before any broader inference is considered.

Bounded definition

Parallel genetic perturbation using a guide library, selectable phenotype, and sequencing-based guide abundance readout.

What the cited work establishes

The study develops a pooled lentiviral CRISPR knockout library and applies positive and negative selection screens in specified human cell models.

The constructs, biological systems, protocols, assays, datasets, and comparisons reported in Genome-Scale CRISPR-Cas9 Knockout Screening in Human Cells.

Claims: urn:maha:claim:pooled-crispr-screening

What remains a separate question

Guide enrichment identifies screen-dependent associations and can reflect editing, growth, delivery, copy number, sampling, and model-specific effects.

Screen enrichment is model-, library-, delivery-, coverage-, phenotype-, and analysis-specific and is not direct clinical or organism-level evidence.

Connected domain graph

Typed dependencies preserve publication state.

Only independently canonical records receive public links and relation statements. Draft graph topology remains private.

mechanistic dependencycanonical

Single-cell perturbation readout

outbound connection · measurement

Single-cell readouts add state-resolved measurements to pooled perturbation designs.

mechanistic dependencycanonical

Single-cell perturbation readout

inbound connection · measurement

Perturb-seq extends pooled screens with cell-resolved transcriptomic outcomes.

Claim ledger

Every proposition keeps its own evidence state.

empirical-claimsingle-study

The cited study develops genome-scale CRISPR knockout libraries and reports positive and negative selection screens in specified human cell models.

Scope
The constructs, biological systems, protocols, assays, datasets, and comparisons reported in Genome-Scale CRISPR-Cas9 Knockout Screening in Human Cells.
Boundary
Guide enrichment identifies screen-dependent associations and can reflect editing, growth, delivery, copy number, sampling, and model-specific effects.
Uncertainty
There is no universal effect estimate for this method; numerical results remain attached to the source experiment, biological system, assay, and analysis choices.
Replication
This candidate records one bounded source package. Independent replications and contradictory results must be compiled separately before evidence maturity is upgraded.

Primary sources

Citation, locator, rights, and boundary travel together.

  1. Source 1 · Science

    Genome-Scale CRISPR-Cas9 Knockout Screening in Human Cells

    Ophir Shalem, Neville E. Sanjana, Ella Hartenian, Xi Shi, et al.

    Exact locator
    Abstract; Figures 1–4; supplementary methods; library and screen-analysis sections.
    Establishes
    The study develops a pooled lentiviral CRISPR knockout library and applies positive and negative selection screens in specified human cell models.
    Boundary
    Screen enrichment is model-, library-, delivery-, coverage-, phenotype-, and analysis-specific and is not direct clinical or organism-level evidence.
    Rights basis
    citation with paraphrase · Maha paraphrases the source-level result and links to the version of record; no article passage is reproduced.